Bioinformatics Software

The Bioinformatics Facility has the following Software and Databases. Of special interest is the large amount of Mac & PC software that is available

More info about the software and databases are discussed in other courses.

Sequence Analysis

• GCG
• EMBL Extensions to GCG
• Intelligenetics
• GDE
• Staden
• SeqPup
• clustal
• phylip

Molecular Modeling

• Visualization only
  • Rasmol
  • VMD
  • Grasp
  • Midas
• Structure Prediction
  • Oxford Molecular
  • Look
  • Sybyl
  • Insight
• Molecular Dynamics
  • Sybyl
  • Insight
  • Gaussian 94
• Docking
  • UCSF Dock
  • UCSD AutoDock
  • Sybyl
  • Insight
• Structure Determination
  • Insight/Felix
  • "O" - Xray
  • XPLOR - NMR

Databases

• Genbank
• PIR
• SwissProt
• TFD
• EPD
• REBASE
• PDB/Oxford Molecular Itidis

E-Mail

• Eudora
• pine
• elm
• mm

Other

• Programming Languages
• AFS Licensed Software
• Stanford Licensed Software
• Mac & PC software
• MacArchives

Stanford

Access

Hardware

Software

Resources

Classes